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dgcP [2020-03-12 12:07:44]
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dgcP [2020-03-12 12:07:44]

diguanylate cyclase
locus
BSU_29650
pI
5.70
mw
65.30 kDa
protein length
579 aa Sequence Blast
gene length
1740 bp Sequence Blast
function
synthesis of c-di-GMP
product
diguanylate cyclase
essential
no
synonyms
ytrP
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.5|Nucleotide metabolism] → [category|SW 2.5.3|Metabolism of signalling nucleotides]

    • Gene

    Coordinates
    3,033,696 3,035,435

    The protein

    Catalyzed reaction/ biological activity

  • synthesis of c-di-GMP from two molecules of GTP [Pubmed|23893111]

    • [SW|Domains]

  • contains an N-terminal GAF domain [Pubmed|23893111]
  • contains a C-terminal [SW|GGDEF domain] [Pubmed|22821967]

    • [SW|Localization]

  • cytoplasma, forms subcellular clusters at the periphery of exponentially growing cells [pubmed|28536559]

    • Expression and Regulation

    Operons

    genes
    [gene|4C577B2CEDD9CD2CBFAF036EF36C9EFAF16F923F|dgcP]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A425 (ytrP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/425 NBRP B. subtilis, Japan]
  • GP1591 (tet) available in [SW|Jörg Stülke]'s lab
  • BKE29650 ([gene|4C577B2CEDD9CD2CBFAF036EF36C9EFAF16F923F|dgcP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTTTATCACCTAAAA, downstream forward: _UP4_TAAAAAAAGCCCAAAACGAT
  • BKK29650 ([gene|4C577B2CEDD9CD2CBFAF036EF36C9EFAF16F923F|dgcP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29650 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTTTATCACCTAAAA, downstream forward: _UP4_TAAAAAAAGCCCAAAACGAT

    • References

  • 23893111,22821967,28536559